The ontologies database provides a collective information for structured controlled vocabularies plant ontology has been developed and contributed by the plant ontology consortium gramene is collaborating with the plant ontology consortium. Full text abstract: the plant ontology consortium (poc, ) is a collaborative effort among model plant genome databases and plant. Current plant ontology curators pankaj jaiswal, lead pi of the plant ontology, oregon state university, lab web site laurel cooper, po project coordinator and research associate, oregon state university. Plant phenotype datasets include many different types of data, formats, and terms from specialized vocabularies because these datasets were designed for different audiences, they frequently contain language and details tailored to investigators with different research objectives and backgrounds.
Bioinformatics the plant structure ontology, a uni ed vocabulary of anatomy and morphology of a flowering plant1[w][oa] katica ilic2, elizabeth a kellogg2, pankaj jaiswal2,felipezapata2, peter f stevens2, leszek p vincent2. Acronym: po: visibility: public: description the plant ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data. The goal of the plant ontology consortium is to produce structured controlled vocabularies, arranged in ontologies, that can be applied to plant-based database information even as knowledge of the biology of the relevant plant taxa (eg development, anatomy, morphology, genomics, proteomics) is. Plant-trait-ontology - explore the plant trait ontology on the planteome site.
The use of controlled, structured vocabularies (ontologies) has become a critical tool for scientists in the post-genomic era of massive datasets adoption and integration of common vocabularies and. The goal of the plant ontology consortium is to produce structured controlled vocabularies, arranged in ontologies, that can be applied to plant-based database information even as knowledge of the biology of the relevant plant taxa (eg development, anatomy, morphology, genomics, proteomics. Title: the plant ontology: a tool for plant genomics publication type: book chapter: year of publication: 2016: authors: cooper, l, jaiswal p: book title: methods in molecular biology (clifton, nj.
Plant ontology project 11k likes an ontology to describe plant structures and growth and developmental stages in a structured way provides a semantic. Tutorial 4: introducing rdfs & owl: ontology rdf:about= the linkeddatatoolscom example plant ontology an example ontology written for the linkeddatatoolscom rdfs & owl introduction tutorial/dc. Name description funding contact agbase: a curated, open-source, web-accessible resource for functional analysis of agricultural plant and animal gene products.
The plant ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data. Plant ontology (po) is a collection of ontologies developed by the plant ontology consortium these ontologies describe anatomical structures and growth and developmental stages across viridiplantae the po is intended for multiple applications, including genetics , genomics , phenomics , and.
This content was extracted from wikipedia and is licensed under the creative commons attribution-sharealike 30 unported license. Plant ontology (po) 389 such as genes, gene products, source materials used for est libraries, microarray and proteomics exper-iments and phenotypes, in ways that enable a com. Gene ontology annotations about the gene ontologies and annotations the goal of the gene ontology consortium is to produce dynamic controlled vocabularies that can be used to describe the roles of genes and gene products in all organisms even as knowledge of gene and protein roles in cells is. Readmemd plant-ontology this is the repository for the plant ontology the current release version of the po can be accessed through its official purls. Plant ontology (po): gene ontology annotation extensively capture generic molecular information pertaining to genes and gene products, nevertheless it does not capture organism specific features like plant phenotypes or plant specific characteristics.